novel_df - Example of Analyzed Rep-Seq data
Example VDJ-rearranged immunoglobulin Rep-Seq sequences derived from a single individual (PGP1), sequenced on the Roche 454 platform, and thought by IMGT/V-QUEST to utilize IGHV1 family alleles, as processed by findNovelAlleles.
data.frame where rows correspond to alleles checked for
polymorphisms and columns give results as well as paramaters used to run
Gadala-Maria et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.