plotNovel - Visualize evidence of novel V alleles
plotNovel is be used to visualize the evidence of any novel V
alleles found using findNovelAlleles.
plotNovel(clip_db, novel_df_row, ncol = 1)
data.framein Change-O format. See findNovelAlleles for details.
- a single row from a data frame as output by findNovelAlleles that contains a polymorphism-containing germline allele
- number of columns to use when laying out the plots
# Load example data and germlines data(sample_db) data(germline_ighv) # Find novel alleles and return relevant data ### Not run: novel_df = findNovelAlleles(sample_db, germline_ighv) data(novel_df) # Plot the evidence for the first (and only) novel allele in the example data novel = selectNovel(novel_df) plotNovel(sample_db, novel[1,])