novel_df - Example of Analyzed Rep-Seq data

Description

Example VDJ-rearranged immunoglobulin Rep-Seq sequences derived from a single individual (PGP1), sequenced on the Roche 454 platform, and thought by IMGT/V-QUEST to utilize IGHV1 family alleles, as processed by findNovelAlleles.

Format

A data.frame where rows correspond to alleles checked for polymorphisms and columns give results as well as paramaters used to run the test.

References

Gadala-Maria et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.