plotNovel - Visualize evidence of novel V alleles

Description

plotNovel is be used to visualize the evidence of any novel V alleles found using findNovelAlleles.

Usage

plotNovel(clip_db, novel_df_row, ncol = 1)

Arguments

clip_db
a data.frame in Change-O format. See findNovelAlleles for details.
novel_df_row
a single row from a data frame as output by findNovelAlleles that contains a polymorphism-containing germline allele
ncol
number of columns to use when laying out the plots

Examples

# Load example data and germlines
data(sample_db)
data(germline_ighv)

# Find novel alleles and return relevant data
### Not run: novel_df = findNovelAlleles(sample_db, germline_ighv)
data(novel_df)
# Plot the evidence for the first (and only) novel allele in the example data
novel = selectNovel(novel_df)
plotNovel(sample_db, novel[1,])

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