sample_db - Example human Rep-Seq data
Example VDJ-rearranged immunoglobulin Rep-Seq sequences derived from a single individual (PGP1), sequenced on the Roche 454 platform, and thought by IMGT/V-QUEST to utilize IGHV1 family alleles.
data.frame where rows correspond to unique VDJ sequences and
- IMGT-gapped nucleotide sequence (
- IMGT/V-QUEST allele calls (
- Junction length (
Gadala-Maria et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.