selectNovel - Select rows containing novel alleles
selectNovel takes the result from findNovelAlleles and
selects only the rows containing unique, novel alleles.
selectNovel(novel, keep_alleles = FALSE)
data.frameof the type returned by findNovelAlleles.
logicalindicating if different alleles leading to the same novel sequence should be kept. See Details.
data.frame containing only unique, novel alleles (if any)
that were in the input.
If, for instance, subject has in his genome
IGHV1-2*02 and a novel
allele equally close to
IGHV1-2*05, the novel allele may be
detected by analyzing sequences that best align to either of these alleles.
TRUE, both polymorphic allele calls will
be retained. In the case that multiple mutation ranges are checked for the
same allele, only one mutation range will be kept in the output.
novel <- selectNovel(SampleNovel)