- Immcantation Portal - Overview of related projects
- pRESTO - Raw read assembly, quality control and UMI processing
- Change-O - V(D)J alignment standardization and clonal clustering
- Alakazam - Lineage reconstruction, V(D)J gene usage, repertoire diversity and physicochemical property analysis
- SHazaM - Mutation profiling and selection strength quantification
- SCOPer - Spectral clustering of B cells into clonal lineages.