SampleNovel - Example novel allele detection results

Description¶

A data.frame of novel allele detection results from findNovelAlleles. Source data was a collection of V(D)J immunoglobulin sequences derived from a single individual (PGP1), sequenced on the Roche 454 platform, and assigned by IMGT/HighV-QUEST to IGHV1 family alleles.

Format¶

A data.frame where rows correspond to alleles checked for polymorphisms and columns give results as well as paramaters used to run the test.

References¶

1. Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.

See also¶

See findNovelAlleles for detailed column descriptions.