SampleDb - Example human immune repertoire data
data.frame of example V(D)J immunoglobulin sequences derived from a
single individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.
data.frame where rows correspond to unique V(D)J sequences and
"SEQUENCE_IMGT": IMGT-gapped V(D)J nucleotide sequence.
"V_CALL": IMGT/HighV-QUEST V segment allele calls.
"D_CALL": IMGT/HighV-QUEST D segment allele calls.
"J_CALL": IMGT/HighV-QUEST J segment allele calls.
"JUNCTION_LENGTH": Junction region length.
- Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.
See airrDb for an AIRR formatted version of