SampleGenotype - Example genotype inferrence results
data.frame of genotype inference results from inferGenotype
after novel allele detection via findNovelAlleles.
Source data was a collection of V(D)J immunoglobulin sequences derived from a single
individual (PGP1), sequenced on the Roche 454 platform, and assigned by
IMGT/HighV-QUEST to IGHV1 family alleles.
data.frame where rows correspond to genes carried by an
individual and columns lists the alleles of those genes and their counts.
- Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.
See inferGenotype for detailed column descriptions.