SampleGenotype - Example genotype inferrence results


A data.frame of genotype inference results from inferGenotype after novel allele detection via findNovelAlleles. Source data was a collection of V(D)J immunoglobulin sequences derived from a single individual (PGP1), sequenced on the Roche 454 platform, and assigned by IMGT/HighV-QUEST to IGHV1 family alleles.


A data.frame where rows correspond to genes carried by an individual and columns lists the alleles of those genes and their counts.


  1. Gadala-Maria, et al. (2015) Automated analysis of high-throughput B cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles. PNAS. 112(8):E862-70.

See also

See inferGenotype for detailed column descriptions.