genotypeFasta - Return the nucleotide sequences of a genotype
genotypeFasta converts a genotype table into a vector of nucleotide
genotypeFasta(genotype, germline_db, novel = NA)
data.frameof alleles denoting a genotype, as returned by inferGenotype.
- vector of named nucleotide germline sequences
matching the alleles detailed in
- an optional
data.framecontaining putative novel alleeles of the type returned by findNovelAlleles.
A named vector of strings containing the germline nucleotide sequences of the alleles in the provided genotype.
# Find the sequences that correspond to the genotype genotype_db <- genotypeFasta(SampleGenotype, SampleGermlineIGHV, SampleNovel)